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Bioinformatics benchmark workflows for Renjin
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Prologue
Bioinformatics
Introduction
Workflows
Affy
Clinical eslII (Essential Statistics Learning 2nd Edition)
Clinical (liver cohort)
Generate count (From RNAseq BAM files)
Integration: iGraph
Integration: Liver cohort
Microarray
Mutation
RNAseq DESeq2
Reverse phase protein array (rppa)
Simulated GEO matrix
Single Cell (Seurat, Clustering and marker discovery)
Single Cell (Seurat, Spatial Inference)
Survival simple
Survival TCGA
TCGA browser
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